Transcript: CPS1-IT1:2

Basic information

LNCipedia transcript ID: CPS1-IT1:2 
HGNC Gene Symbol: CPS1-IT1    
HGNC Full Gene Name: CPS1 intronic transcript 1
Ensembl Gene ID: ENSG00000280837
Ensembl Transcript ID: ENST00000628368
RefSeq ID: NR_002763
Location (hg19): chr2:211482295-211484600
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2306 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000628368.1; NR_002763.2
Alternative gene names: ENSG00000280837.1; CPS1-IT1; PRO0132; CPS1-IT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -135.7538 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CPS1-IT1:2 no no no no

Available literature

  1. Xiaoguang (2017), Long Noncoding RNA CPS1-IT1 Suppresses Cell Proliferation and Metastasis in Human Lung Cancer., Oncol. Res.
  2. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  3. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 CPS1-IT1:2
4.1 CPS1-IT1:2
5.0 CPS1-IT1:2
5.1 CPS1-IT1:2
5.2 CPS1-IT1:2