Transcript: CSTF3-DT:17

Basic information

LNCipedia transcript ID: CSTF3-DT:17 
LNCipedia gene ID: CSTF3-DT
Location (hg19): chr11:33183172-33223699
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 40528 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000247151.2|ENCT00000065768.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 47.0703 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CSTF3-DT:17 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CSTF3-AS1:5
5.0 CSTF3-AS1:5
5.1 CSTF3-DT:6
5.2 CSTF3-DT:17