Transcript: CTBP1-DT:25

Basic information

LNCipedia transcript ID: CTBP1-DT:25 
LNCipedia gene ID: CTBP1-DT
Location (hg19): chr4:1243466-1246244
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2371 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT094690
Alternative gene names: MGC21675


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.9955 non-coding 
CPAT coding probability 55.57% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CTBP1-DT:25 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C4orf42-1:9
4.0 CTBP1-AS2:5
4.1 CTBP1-AS2:5
5.0 CTBP1-AS2:5
5.1 CTBP1-DT:16
5.2 CTBP1-DT:25