Transcript: CYTOR:108

Basic information

LNCipedia transcript ID: CYTOR:108 
HGNC Gene Symbol: CYTOR    
HGNC Full Gene Name: cytoskeleton regulator RNA
Ensembl Gene ID: ENSG00000222041
Ensembl Transcript ID: ENST00000423846
Location (hg19): chr2:87755061-87820932
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 457 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423846; ENST00000423846.1; LINC00152-002; OTTHUMT00000330384.3; ENST00000423846.5
Alternative gene names: ENSG00000222041; NCRNA00152; ENSG00000222041.5; LINC00152; OTTHUMG00000130273.9; ENSG00000222041.6; ENSG00000222041.10; MGC4677; CYTOR; ENSG00000222041.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.4498 non-coding 
CPAT coding probability 12.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CYTOR:108 no no no no

Available literature

  1. Van Grembergen (2016), Portraying breast cancers with long noncoding RNAs., Sci Adv
  2. Guo (2015), Competing endogenous RNA networks and gastric cancer., World J. Gastroenterol.
  3. Ji (2015), LINC00152 promotes proliferation in hepatocellular carcinoma by targeting EpCAM via the mTOR signaling pathway., Oncotarget
  4. Li (2015), Plasma long noncoding RNA protected by exosomes as a potential stable biomarker for gastric cancer., Tumour Biol.
  5. Li (2015), HULC and Linc00152 Act as Novel Biomarkers in Predicting Diagnosis of Hepatocellular Carcinoma., Cell. Physiol. Biochem.
  6. Müller (2015), Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer., Mol. Cancer
  7. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
  8. Silva (2015), The Clinical Relevance of Long Non-Coding RNAs in Cancer., Cancers (Basel)
  9. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res
  10. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  11. Zhao (2015), Long non-coding RNA Linc00152 is involved in cell cycle arrest, apoptosis, epithelial to mesenchymal transition, cell migration and invasion in gastric cancer., Cell Cycle
  12. Zhou (2015), Linc00152 promotes proliferation in gastric cancer through the EGFR-dependent pathway., J. Exp. Clin. Cancer Res.
  13. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics
  14. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  15. Hu (2014), Long noncoding RNA GAPLINC regulates CD44-dependent cell invasiveness and associates with poor prognosis of gastric cancer., Cancer Res.
  16. Pang (2014), Increased expression of long intergenic non-coding RNA LINC00152 in gastric cancer and its clinical significance., Tumour Biol.
  17. Shao (2014), Gastric juice long noncoding RNA used as a tumor marker for screening gastric cancer., Cancer
  18. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  19. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep
  20. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.
  21. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLGLB2-1:8
3.1 lnc-PLGLB2-1:8
4.0 LINC00152:13
4.1 LINC00152:13
5.0 LINC00152:13
5.1 CYTOR:46
5.2 CYTOR:108