Transcript: DACT3-AS1:3

Basic information

LNCipedia transcript ID: DACT3-AS1:3 
HGNC Gene Symbol: DACT3-AS1    
HGNC Full Gene Name: DACT3 antisense RNA 1
Ensembl Gene ID: ENSG00000245598
Ensembl Transcript ID: ENST00000500689
RefSeq ID: NR_040041
Location (hg19): chr19:47164735-47174598
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1304 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500689; ENST00000500689.1; CTB-12A17.1-001; OTTHUMT00000387312.1; NONHSAT066908; NR_040041; NR_040041.1
Alternative gene names: ENSG00000245598; CTB-12A17.1; ENSG00000245598.2; OTTHUMG00000165987.1; DACT3-AS1; ENSG00000245598.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.7659 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DACT3-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALM3-1:2
3.1 lnc-CALM3-1:2
4.0 DACT3-AS1:3
4.1 DACT3-AS1:3
5.0 DACT3-AS1:3
5.1 DACT3-AS1:3
5.2 DACT3-AS1:3