Transcript: DBET:1

Basic information

LNCipedia transcript ID: DBET:1 
LNCipedia gene ID: DBET
Location (hg19): chr4:190979128-190986366
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 710 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_2829_chr4:190979127-190986366_testes
Alternative gene names: DBE-T; DUX4L30


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.4068 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DBET:1 no no no no

Available literature

  1. Cabianca (2012), A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DUX4L7-3:1
4.0 DBET:1
4.1 DBET:1
5.0 DBET:1
5.1 DBET:1
5.2 DBET:1