Transcript: DBET:2

Basic information

LNCipedia transcript ID: DBET:2 
HGNC Gene Symbol: DBET    
HGNC Full Gene Name: D4Z4 binding element transcript
Ensembl Gene ID: ENSG00000281591
Ensembl Transcript ID: ENST00000630918
RefSeq ID: NR_121644
Location (hg19): chr4:190985657-190989019
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3363 bp
Exons: 1
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121644; ENST00000630918.1; NR_121644.1
Alternative gene names: ENSG00000281591.1; DBET; DBE-T; DUX4L30


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 604.3281 coding 
CPAT coding probability 99.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DBET:2 no no no no

Available literature

  1. Cabianca (2012), A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DUX4L7-3:2
4.0 DBET:2
4.1 DBET:2
5.0 DBET:2
5.1 DBET:2
5.2 DBET:2