Transcript: DBH-AS1:4

Basic information

LNCipedia transcript ID: DBH-AS1:4 
LNCipedia gene ID: DBH-AS1
RefSeq ID: NR_102735
Location (hg19): chr9:136519709-136522530
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2233 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_102735; NR_102735.1
Alternative gene names: BPR; DBH-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.6169 non-coding 
CPAT coding probability 16.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DBH-AS1:4 yes no no no

Available literature

  1. Huang (2015), HBx-related long non-coding RNA DBH-AS1 promotes cell proliferation and survival by activating MAPK signaling in hepatocellular carcinoma., Oncotarget
  2. Gilbert (2000), Physical and cDNA mapping in the DBH region of human chromosome 9q34., Hum. Hered.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SARDH-1:5
4.0 DBH-AS1:4
4.1 DBH-AS1:4
5.0 DBH-AS1:4
5.1 DBH-AS1:4
5.2 DBH-AS1:4