Transcript: DCST1-AS1:26

Basic information

LNCipedia transcript ID: DCST1-AS1:26 
LNCipedia gene ID: DCST1-AS1
Location (hg19): chr1:155017723-155019038
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1210 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1516:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -71.1105 non-coding 
CPAT coding probability 23.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DCST1-AS1:26 yes no no no

Available literature

  1. Li (2016), Integrated bioinformatics analysis of chromatin regulator EZH2 in regulating mRNA and lncRNA expression by ChIP sequencing and RNA sequencing., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-DCST2-1:7
4.1 lnc-DCST2-1:7
5.0 lnc-DCST2-1:7
5.1 DCST1-AS1:14
5.2 DCST1-AS1:26