Transcript: DIAPH2-AS1:3

Basic information

LNCipedia transcript ID: DIAPH2-AS1:3 
HGNC Gene Symbol: DIAPH2-AS1    
HGNC Full Gene Name: DIAPH2 antisense RNA 1
Ensembl Gene ID: ENSG00000236256
Ensembl Transcript ID: ENST00000445414
Location (hg19): chrX:96788172-96872258
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 606 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445414.1; DIAPH2-AS1-001; OTTHUMT00000057466.1
Alternative gene names: ENSG00000236256.4; DIAPH2-AS1; OTTHUMG00000021989.2; ENSG00000236256.5; ENSG00000236256.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.9454 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DIAPH2-AS1:3 yes no no no

Available literature

  1. Dizikes (1995), The lymphoid proliferation-associated gene EPAG maps to human chromosome region Xq21-->q22., Cytogenet. Cell Genet.
  2. Bennett (1994), Properties of a novel gene isolated from a Hodgkin's disease cell line that is expressed early during lymphoid cell activation., J. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCDH19-1:2
4.0 DIAPH2-AS1:3
4.1 DIAPH2-AS1:3
5.0 DIAPH2-AS1:3
5.1 DIAPH2-AS1:3
5.2 DIAPH2-AS1:3