Transcript: DIO3OS:13

Basic information

LNCipedia transcript ID: DIO3OS:13 
LNCipedia gene ID: DIO3OS
Location (hg19): chr14:102023649-102026422
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1809 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1588:1
Alternative gene names: NCRNA00041; DIO3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -158.1942 non-coding 
CPAT coding probability 89.88% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DIO3OS:13 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  3. Hernandez (2007), Gene expression from the imprinted Dio3 locus is associated with cell proliferation of cultured brown adipocytes., Endocrinology
  4. Kester (2006), Regulation of type III iodothyronine deiodinase expression in human cell lines., Endocrinology
  5. Tierling (2006), High-resolution map and imprinting analysis of the Gtl2-Dnchc1 domain on mouse chromosome 12., Genomics
  6. Hernandez (2004), Complex organization and structure of sense and antisense transcripts expressed from the DIO3 gene imprinted locus., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 DIO3OS:13
4.1 DIO3OS:13
5.0 DIO3OS:13
5.1 DIO3OS:13
5.2 DIO3OS:13