Transcript: DIO3OS:28

Basic information

LNCipedia transcript ID: DIO3OS:28 
LNCipedia gene ID: DIO3OS
Location (hg19): chr14:102023641-102026729
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1085 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000258498.2|ENST00000554441.1
Alternative gene names: NCRNA00041; DIO3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -253.435 non-coding 
CPAT coding probability 11.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DIO3OS:28 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  3. Hernandez (2007), Gene expression from the imprinted Dio3 locus is associated with cell proliferation of cultured brown adipocytes., Endocrinology
  4. Kester (2006), Regulation of type III iodothyronine deiodinase expression in human cell lines., Endocrinology
  5. Tierling (2006), High-resolution map and imprinting analysis of the Gtl2-Dnchc1 domain on mouse chromosome 12., Genomics
  6. Hernandez (2004), Complex organization and structure of sense and antisense transcripts expressed from the DIO3 gene imprinted locus., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 DIO3OS:28
5.0 DIO3OS:28
5.1 DIO3OS:28
5.2 DIO3OS:28