Transcript: DIRC3-AS1:3

Basic information

LNCipedia transcript ID: DIRC3-AS1:3 
HGNC Gene Symbol: DIRC3-AS1    
HGNC Full Gene Name: DIRC3 antisense RNA 1
Ensembl Gene ID: ENSG00000233143
Ensembl Transcript ID: ENST00000452813
Location (hg19): chr2:218147462-218200843
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 557 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003110; ENST00000452813; ENST00000452813.1; AC009492.1-001; OTTHUMT00000339328.1; NONHSAT076859
Alternative gene names: XLOC_001864; linc-RUFY4-2; ENSG00000233143; AC009492.1; ENSG00000233143.1; OTTHUMG00000155286.1; DIRC3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.4395 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DIRC3-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC007557.1.1-4:2
3.1 lnc-AC007557.1.1-4:2
4.0 DIRC3-AS1:3
4.1 DIRC3-AS1:3
5.0 DIRC3-AS1:3
5.1 DIRC3-AS1:3
5.2 DIRC3-AS1:3