Transcript: DLGAP1-AS1:2

Basic information

LNCipedia transcript ID: DLGAP1-AS1:2 
LNCipedia gene ID: DLGAP1-AS1
Location (hg19): chr18:3593736-3598319
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2246 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002kmi_2
Alternative gene names: HsT914; FLJ35776


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.9893 non-coding 
CPAT coding probability 12.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP1-AS1:2 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGIF1-2:7
4.0 DLGAP1-AS1:2
4.1 DLGAP1-AS1:2
5.0 DLGAP1-AS1:2
5.1 DLGAP1-AS1:2
5.2 DLGAP1-AS1:2