Transcript: DNAJB8-AS1:3

Basic information

LNCipedia transcript ID: DNAJB8-AS1:3 
HGNC Gene Symbol: DNAJB8-AS1    
HGNC Full Gene Name: DNAJB8 antisense RNA 1
Ensembl Gene ID: ENSG00000242049
Ensembl Transcript ID: ENST00000471626
RefSeq ID: NR_037890
Location (hg19): chr3:128182437-128191160
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1798 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000471626.1; DNAJB8-AS1-001; OTTHUMT00000356923.1; NONHSAT091763; NR_037890; NR_037890.1
Alternative gene names: ENSG00000242049.1; DNAJB8-AS1; OTTHUMG00000159687.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.0219 non-coding 
CPAT coding probability 12.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DNAJB8-AS1:3 yes no no no

Available literature

  1. Bryzghalov (2016), Retroposition as a source of antisense long non-coding RNAs with possible regulatory functions., Acta Biochim. Pol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EEFSEC-1:1
4.0 DNAJB8-AS1:3
4.1 DNAJB8-AS1:3
5.0 DNAJB8-AS1:3
5.1 DNAJB8-AS1:3
5.2 DNAJB8-AS1:3