Transcript: DNAJB8-AS1:6

Basic information

LNCipedia transcript ID: DNAJB8-AS1:6 
LNCipedia gene ID: DNAJB8-AS1
Location (hg19): chr3:128189739-128190360
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 344 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006965; NONHSAT091766
Alternative gene names: XLOC_002806; linc-RAB7A-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.209 non-coding 
CPAT coding probability 2.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DNAJB8-AS1:6 no no no no

Available literature

  1. Bryzghalov (2016), Retroposition as a source of antisense long non-coding RNAs with possible regulatory functions., Acta Biochim. Pol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EEFSEC-1:1
3.1 lnc-EEFSEC-1:2
4.0 DNAJB8-AS1:6
4.1 DNAJB8-AS1:6
5.0 DNAJB8-AS1:6
5.1 DNAJB8-AS1:6
5.2 DNAJB8-AS1:6