Transcript: DSCR8:17

Basic information

LNCipedia transcript ID: DSCR8:17 
LNCipedia gene ID: DSCR8
RefSeq ID: NR_026840
Location (hg19): chr21:39493545-39528605
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 574 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026840; NR_026840.1
Alternative gene names: DSCR8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.1489 non-coding 
CPAT coding probability 42.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DSCR8:17 yes no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics
  2. de Wit (2002), Expression profiling of MMA-1a and splice variant MMA-1b: new cancer/testis antigens identified in human melanoma., Int. J. Cancer
  3. Dahmane (1998), Transcriptional map of the 2.5-Mb CBR-ERG region of chromosome 21 involved in Down syndrome., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DSCR8-2:4
4.0 lnc-DSCR8-2:4
4.1 lnc-DSCR8-2:4
5.0 lnc-DSCR8-2:4
5.1 DSCR8:5
5.2 DSCR8:17