Transcript: DSCR8:8

Basic information

LNCipedia transcript ID: DSCR8:8 
HGNC Gene Symbol: DSCR8    
HGNC Full Gene Name: Down syndrome critical region 8
Ensembl Gene ID: ENSG00000198054
Ensembl Transcript ID: ENST00000400477
Location (hg19): chr21:39493567-39528605
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 534 bp
Exons: 4
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000400477.7
Alternative gene names: ENSG00000198054.12; DSCR8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -17.1489 non-coding 
CPAT coding probability 31.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DSCR8:8 yes no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics
  2. de Wit (2002), Expression profiling of MMA-1a and splice variant MMA-1b: new cancer/testis antigens identified in human melanoma., Int. J. Cancer
  3. Dahmane (1998), Transcriptional map of the 2.5-Mb CBR-ERG region of chromosome 21 involved in Down syndrome., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 DSCR8:8
5.1 DSCR8:8
5.2 DSCR8:8