Transcript: DSCR9:11

Basic information

LNCipedia transcript ID: DSCR9:11 
LNCipedia gene ID: DSCR9
Location (hg19): chr21:38592889-38593843
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 955 bp
Exons: 1
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000543267; ENST00000543267.1; DSCR9-201
Alternative gene names: ENSG00000230366; DSCR9; ENSG00000230366.5; OTTHUMG00000086655.2; NCRNA00038


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.8462 non-coding 
CPAT coding probability 57.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DSCR9:11 no no no no

Available literature

  1. Takamatsu (2002), Identification of two novel primate-specific genes in DSCR., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC3-1:6
3.1 lnc-TTC3-1:11
4.0 DSCR9:11
4.1 DSCR9:11
5.0 DSCR9:11
5.1 DSCR9:11
5.2 DSCR9:11