Transcript: EDRF1-AS1:22

Basic information

LNCipedia transcript ID: EDRF1-AS1:22 
LNCipedia gene ID: EDRF1-AS1
Ensembl Gene ID: ENSG00000224023
Ensembl Transcript ID: ENST00000423178
Location (hg19): chr10:127393859-127408135
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2600 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423178.2; RP11-383C5.4-002; OTTHUMT00000050919.2; NONHSAT016899; ENST00000423178.6
Alternative gene names: ENSG00000224023.5; RP11-383C5.4; OTTHUMG00000019231.4; ENSG00000224023.6; ENSG00000224023.10; FLJ37035; ; AL158835.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6933 non-coding 
CPAT coding probability 15.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EDRF1-AS1:22 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf122-1:1
4.0 EDRF1-AS1:22
4.1 EDRF1-AS1:22
5.0 EDRF1-AS1:22
5.1 EDRF1-AS1:22
5.2 EDRF1-AS1:22