Transcript: EDRF1-AS1:48

Basic information

LNCipedia transcript ID: EDRF1-AS1:48 
LNCipedia gene ID: EDRF1-AS1
Ensembl Gene ID: ENSG00000234134
Ensembl Transcript ID: ENST00000430970
Location (hg19): chr10:127407340-127407934
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 300 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430970.1; RP11-383C5.5-001; OTTHUMT00000050920.1; NONHSAT016906
Alternative gene names: ENSG00000234134.1; RP11-383C5.5; OTTHUMG00000019232.1; ; AL158835.2; AL158835.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EDRF1-AS1:48 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf122-2:1
4.0 lnc-C10orf122-2:1
4.1 EDRF1-AS1:48
5.0 EDRF1-AS1:48
5.1 EDRF1-AS1:48
5.2 EDRF1-AS1:48