Transcript: EGOT:18

Basic information

LNCipedia transcript ID: EGOT:18 
LNCipedia gene ID: EGOT
Location (hg19): chr3:4787116-4793306
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4772 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235947.1|FTMT20900031420.1
Alternative gene names: EGO; NCRNA00190


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -91.7467 non-coding 
CPAT coding probability 22.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EGOT:18 yes no no no

Available literature

  1. Xu (2015), Downregulation of the long noncoding RNA EGOT correlates with malignant status and poor prognosis in breast cancer., Tumour Biol.
  2. Du (2013), Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer., Nat. Struct. Mol. Biol.
  3. Rose (2011), Molecular evolution of the non-coding eosinophil granule ontogeny transcript., Front Genet
  4. Wagner (2007), EGO, a novel, noncoding RNA gene, regulates eosinophil granule protein transcript expression., Blood


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 EGOT:18
5.0 EGOT:18
5.1 EGOT:18
5.2 EGOT:18