Transcript: EGOT:6

Basic information

LNCipedia transcript ID: EGOT:6 
LNCipedia gene ID: EGOT
Ensembl Gene ID: ENSG00000235978
Ensembl Transcript ID: ENST00000449914
Location (hg19): chr3:4855981-4927472
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 390 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449914.5
Alternative gene names: ENSG00000235978.6; AC018816.3; EGO; NCRNA00190; AC018816.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -997.5828 non-coding 
CPAT coding probability 4.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EGOT:6 yes no no no

Available literature

  1. Xu (2015), Downregulation of the long noncoding RNA EGOT correlates with malignant status and poor prognosis in breast cancer., Tumour Biol.
  2. Du (2013), Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer., Nat. Struct. Mol. Biol.
  3. Rose (2011), Molecular evolution of the non-coding eosinophil granule ontogeny transcript., Front Genet
  4. Wagner (2007), EGO, a novel, noncoding RNA gene, regulates eosinophil granule protein transcript expression., Blood


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC018816.3.1-9:7
4.1 EGOT:6
5.0 EGOT:6
5.1 EGOT:6
5.2 EGOT:6