Transcript: EIPR1-IT1:3

Basic information

LNCipedia transcript ID: EIPR1-IT1:3 
HGNC Gene Symbol: EIPR1-IT1    
HGNC Full Gene Name: EIPR1 intronic transcript 1
Ensembl Gene ID: ENSG00000224885
Ensembl Transcript ID: ENST00000454977
Location (hg19): chr2:3302112-3305236
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 718 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454977.1; TSSC1-IT1-001; OTTHUMT00000322622.1; NONHSAT068714
Alternative gene names: ENSG00000224885.1; TSSC1-IT1; OTTHUMG00000151430.1; ; EIPR1-IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.2903 non-coding 
CPAT coding probability 9.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EIPR1-IT1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADI1-2:1
4.0 TSSC1-IT1:1
4.1 TSSC1-IT1:1
5.0 TSSC1-IT1:1
5.1 EIPR1-IT1:2
5.2 EIPR1-IT1:3