Transcript: ELFN1-AS1:3

Basic information

LNCipedia transcript ID: ELFN1-AS1:3 
LNCipedia gene ID: ELFN1-AS1
RefSeq ID: NR_120508
Location (hg19): chr7:1778266-1781946
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1008 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120508; NR_120508.1
Alternative gene names: ; MYCLo-2; ELFN1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.3652 non-coding 
CPAT coding probability 9.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ELFN1-AS1:3 no no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.
  2. Polev (2014), ELFN1-AS1: a novel primate gene with possible microRNA function expressed predominantly in human tumors., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC074389.6.1-2:4
4.0 ELFN1-AS1:3
4.1 ELFN1-AS1:3
5.0 ELFN1-AS1:3
5.1 ELFN1-AS1:3
5.2 ELFN1-AS1:3