Transcript: ELFN1-AS1:5

Basic information

LNCipedia transcript ID: ELFN1-AS1:5 
HGNC Gene Symbol: ELFN1-AS1    
HGNC Full Gene Name: ELFN1 antisense RNA 1
Ensembl Gene ID: ENSG00000236081
Ensembl Transcript ID: ENST00000453348
Location (hg19): chr7:1778266-1781908
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 637 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453348; ENST00000453348.1; AC074389.9-001; OTTHUMT00000322894.1; NONHSAT118765
Alternative gene names: ENSG00000236081; AC074389.9; ENSG00000236081.1; OTTHUMG00000151496.1; ELFN1-AS1; ; MYCLo-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.3652 non-coding 
CPAT coding probability 9.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ELFN1-AS1:5 no no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.
  2. Polev (2014), ELFN1-AS1: a novel primate gene with possible microRNA function expressed predominantly in human tumors., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC074389.6.1-2:2
3.1 lnc-AC074389.6.1-2:2
4.0 ELFN1-AS1:5
4.1 ELFN1-AS1:5
5.0 ELFN1-AS1:5
5.1 ELFN1-AS1:5
5.2 ELFN1-AS1:5