Transcript: EMX2OS:10

Basic information

LNCipedia transcript ID: EMX2OS:10 
HGNC Gene Symbol: EMX2OS    
HGNC Full Gene Name: EMX2 opposite strand/antisense RNA
Ensembl Gene ID: ENSG00000229847
Ensembl Transcript ID: ENST00000423419
Location (hg19): chr10:119250160-119254199
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423419.1; EMX2OS-003; OTTHUMT00000050573.1; NONHSAT016527
Alternative gene names: ENSG00000229847.2; EMX2OS; OTTHUMG00000019125.2; ENSG00000229847.4; ENSG00000229847.8; NCRNA00045; EMX2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.7522 non-coding 
CPAT coding probability 10.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EMX2OS:10 no no no no

Available literature

  1. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  2. Michelhaugh (2011), Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers., J. Neurochem.
  3. Spigoni (2010), Regulation of Emx2 expression by antisense transcripts in murine cortico-cerebral precursors., PLoS ONE
  4. Noonan (2003), Antisense transcripts at the EMX2 locus in human and mouse., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZD8-2:4
4.0 EMX2OS:10
4.1 EMX2OS:10
5.0 EMX2OS:10
5.1 EMX2OS:10
5.2 EMX2OS:10