Transcript: EMX2OS:2

Basic information

LNCipedia transcript ID: EMX2OS:2 
LNCipedia gene ID: EMX2OS
RefSeq ID: NR_002791
Location (hg19): chr10:119243804-119304579
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7282 bp
Exons: 4
Sources: long non-coding rna db - lncrnadb.com; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_002791.2; NONHSAT016525; NR_002791
Alternative gene names: Emx2os; NCRNA00045; EMX2-AS1; EMX2OS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.3828 non-coding 
CPAT coding probability 32.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EMX2OS:2 yes no no no

Available literature

  1. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  2. Michelhaugh (2011), Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers., J. Neurochem.
  3. Spigoni (2010), Regulation of Emx2 expression by antisense transcripts in murine cortico-cerebral precursors., PLoS ONE
  4. Noonan (2003), Antisense transcripts at the EMX2 locus in human and mouse., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZD8-2:7
4.0 EMX2OS:2
4.1 EMX2OS:2
5.0 EMX2OS:2
5.1 EMX2OS:2
5.2 EMX2OS:2