Transcript: EPB41L4A-AS1:6

Basic information

LNCipedia transcript ID: EPB41L4A-AS1:6 
HGNC Gene Symbol: EPB41L4A-AS1    
HGNC Full Gene Name: EPB41L4A antisense RNA 1
Ensembl Gene ID: ENSG00000224032
Ensembl Transcript ID: ENST00000508590
Location (hg19): chr5:111496631-111498008
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 292 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508590; ENST00000508590.1; EPB41L4A-AS1-004; OTTHUMT00000370979.1; NONHSAT103213
Alternative gene names: ENSG00000224032; NCRNA00219; ENSG00000224032.2; EPB41L4A-AS1; OTTHUMG00000128803.3; ENSG00000224032.6; TIGA1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EPB41L4A-AS1:6 yes no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science
  2. Ueno (1998), Cloning and tissue expression of cDNAs from chromosome 5q21-22 which is frequently deleted in advanced lung cancer., Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APC-3:4
3.1 lnc-APC-6:4
4.0 EPB41L4A-AS1:6
4.1 EPB41L4A-AS1:6
5.0 EPB41L4A-AS1:6
5.1 EPB41L4A-AS1:6
5.2 EPB41L4A-AS1:6