Transcript: EPB41L4A-DT:6

Basic information

LNCipedia transcript ID: EPB41L4A-DT:6 
LNCipedia gene ID: EPB41L4A-DT
Location (hg19): chr5:111754986-111756673
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1688 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1778:1
Alternative gene names: FLJ11235


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -78.0947 non-coding 
CPAT coding probability 98.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
EPB41L4A-DT:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 EPB41L4A-AS2:1
4.1 EPB41L4A-AS2:1
5.0 EPB41L4A-AS2:1
5.1 EPB41L4A-DT:2
5.2 EPB41L4A-DT:6