Transcript: EPHA5-AS1:1

Basic information

LNCipedia transcript ID: EPHA5-AS1:1 
HGNC Gene Symbol: EPHA5-AS1    
HGNC Full Gene Name: EPHA5 antisense RNA 1
Ensembl Gene ID: ENSG00000250846
Ensembl Transcript ID: ENST00000509473
RefSeq ID: NR_034138
Location (hg19): chr4:66535679-66559104
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1177 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000509473; ENST00000509473.1; RP11-807H7.1-001; OTTHUMT00000361851.1; NONHSAT096664; NR_034138; ENST00000509473.5; NR_034138.1
Alternative gene names: ENSG00000250846; RP11-807H7.1; ENSG00000250846.2; OTTHUMG00000161982.1; ENSG00000250846.6; EPHA5-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.613 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EPHA5-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAP1-6:1
3.1 lnc-STAP1-6:2
4.0 EPHA5-AS1:1
4.1 EPHA5-AS1:1
5.0 EPHA5-AS1:1
5.1 EPHA5-AS1:1
5.2 EPHA5-AS1:1