Transcript: EPHA5-AS1:2

Basic information

LNCipedia transcript ID: EPHA5-AS1:2 
LNCipedia gene ID: EPHA5-AS1
Location (hg19): chr4:66535679-66536157
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 479 bp
Exons: 1
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000535369; ENST00000535369.1; RP11-807H7.1-201; NONHSAT096663
Alternative gene names: ENSG00000250846; RP11-807H7.1; ENSG00000250846.2; OTTHUMG00000161982.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.613 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EPHA5-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAP1-6:2
3.1 lnc-STAP1-6:1
4.0 EPHA5-AS1:2
4.1 EPHA5-AS1:2
5.0 EPHA5-AS1:2
5.1 EPHA5-AS1:2
5.2 EPHA5-AS1:2