Transcript: EPHA5-AS1:4

Basic information

LNCipedia transcript ID: EPHA5-AS1:4 
HGNC Gene Symbol: EPHA5-AS1    
HGNC Full Gene Name: EPHA5 antisense RNA 1
Ensembl Gene ID: ENSG00000250846
Ensembl Transcript ID: ENST00000514260
Location (hg19): chr4:66536248-66559104
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 422 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514260; TCONS_00007544; ENST00000514260.1; RP11-807H7.1-002; OTTHUMT00000361852.1; NONHSAT096665
Alternative gene names: ENSG00000250846; XLOC_003558; linc-STAP1-6; RP11-807H7.1; ENSG00000250846.2; OTTHUMG00000161982.1; ENSG00000250846.6; EPHA5-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -228.0387 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EPHA5-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAP1-6:4
3.1 lnc-STAP1-6:4
4.0 EPHA5-AS1:4
4.1 EPHA5-AS1:4
5.0 EPHA5-AS1:4
5.1 EPHA5-AS1:4
5.2 EPHA5-AS1:4