Transcript: ESRG:1

Basic information

LNCipedia transcript ID: ESRG:1 
HGNC Gene Symbol: ESRG    
HGNC Full Gene Name: embryonic stem cell related
Ensembl Gene ID: ENSG00000265992
Ensembl Transcript ID: ENST00000583516
Location (hg19): chr3:54666149-54673884
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3140 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583516.1; ESRG-001; OTTHUMT00000447578.1; NONHSAT090016
Alternative gene names: ENSG00000265992.1; ESRG; OTTHUMG00000179678.1; HESRG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.3704 non-coding 
CPAT coding probability 6.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ESRG:1 yes no no no

Available literature

  1. Wanggou (2012), HESRG: a novel biomarker for intracranial germinoma and embryonal carcinoma., J. Neurooncol.
  2. Zhao (2007), Transcriptional profiling of human embryonic stem cells and embryoid bodies identifies HESRG, a novel stem cell gene., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRTM1-3:1
4.0 ESRG:1
4.1 ESRG:1
5.0 ESRG:1
5.1 ESRG:1
5.2 ESRG:1