Transcript: EXOC3-AS1:2

Basic information

LNCipedia transcript ID: EXOC3-AS1:2 
HGNC Gene Symbol: EXOC3-AS1    
HGNC Full Gene Name: EXOC3 antisense RNA 1
Ensembl Gene ID: ENSG00000221990
Ensembl Transcript ID: ENST00000623673
Location (hg19): chr5:441613-443275
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1663 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623673.1
Alternative gene names: ENSG00000221990.4; EXOC3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.2098 non-coding 
CPAT coding probability 29.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EXOC3-AS1:2 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 EXOC3-AS1:2
4.1 EXOC3-AS1:2
5.0 EXOC3-AS1:2
5.1 EXOC3-AS1:2
5.2 EXOC3-AS1:2