Transcript: EXTL3-AS1:12

Basic information

LNCipedia transcript ID: EXTL3-AS1:12 
LNCipedia gene ID: EXTL3-AS1
Location (hg19): chr8:28547957-28556246
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1073 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014955; NONHSAT125748
Alternative gene names: XLOC_007033; linc-FBXO16-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.1975 non-coding 
CPAT coding probability 21.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EXTL3-AS1:12 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-INTS9-1:7
3.1 lnc-INTS9-1:7
4.0 EXTL3-AS1:12
4.1 EXTL3-AS1:12
5.0 EXTL3-AS1:12
5.1 EXTL3-AS1:12
5.2 EXTL3-AS1:12