Transcript: EXTL3-AS1:3

Basic information

LNCipedia transcript ID: EXTL3-AS1:3 
LNCipedia gene ID: EXTL3-AS1
Location (hg19): chr8:28553742-28558836
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3665 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00014553
Alternative gene names: XLOC_007033; linc-FBXO16-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.3696 non-coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EXTL3-AS1:3 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-INTS9-1:2
3.1 lnc-INTS9-1:3
4.0 EXTL3-AS1:3
4.1 EXTL3-AS1:3
5.0 EXTL3-AS1:3
5.1 EXTL3-AS1:3
5.2 EXTL3-AS1:3