Transcript: F11-AS1:1

Basic information

LNCipedia transcript ID: F11-AS1:1 
LNCipedia gene ID: F11-AS1
RefSeq ID: NR_033900
Location (hg19): chr4:187207252-187422212
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1235 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT099653; NR_033900; NR_033900.1
Alternative gene names: ; F11-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 177.2856 coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
F11-AS1:1 no no no no

Available literature

  1. Yu (2017), Analysis of distinct long noncoding RNA transcriptional fingerprints in pancreatic ductal adenocarcinoma., Cancer Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTNR1A-1:6
4.0 F11-AS1:1
4.1 F11-AS1:1
5.0 F11-AS1:1
5.1 F11-AS1:1
5.2 F11-AS1:1