Transcript: F11-AS1:4

Basic information

LNCipedia transcript ID: F11-AS1:4 
HGNC Gene Symbol: F11-AS1    
HGNC Full Gene Name: F11 antisense RNA 1
Ensembl Gene ID: ENSG00000251165
Ensembl Transcript ID: ENST00000505103
Location (hg19): chr4:187207248-187422151
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1178 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505103.1; RP11-215A19.1-004; OTTHUMT00000360442.1; ENST00000505103.5
Alternative gene names: ENSG00000251165.1; RP11-215A19.1; OTTHUMG00000160319.3; F11-AS1; ENSG00000251165.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 177.2856 coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
F11-AS1:4 no no no no

Available literature

  1. Yu (2017), Analysis of distinct long noncoding RNA transcriptional fingerprints in pancreatic ductal adenocarcinoma., Cancer Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTNR1A-1:1
4.0 F11-AS1:4
4.1 F11-AS1:4
5.0 F11-AS1:4
5.1 F11-AS1:4
5.2 F11-AS1:4