Transcript: FAM111A-DT:21

Basic information

LNCipedia transcript ID: FAM111A-DT:21 
LNCipedia gene ID: FAM111A-DT
Location (hg19): chr11:58897572-58910488
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5422 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000245571.2|HBMT00000247312.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.6653 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM111A-DT:21 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MPEG1-2:13
5.0 lnc-MPEG1-2:13
5.1 FAM111A-DT:4
5.2 FAM111A-DT:21