Transcript: FAM111A-DT:29

Basic information

LNCipedia transcript ID: FAM111A-DT:29 
LNCipedia gene ID: FAM111A-DT
Location (hg19): chr11:58897606-58910228
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2106 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT021502
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.717 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM111A-DT:29 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPEG1-2:9
4.0 lnc-MPEG1-2:9
4.1 lnc-MPEG1-2:9
5.0 lnc-MPEG1-2:9
5.1 FAM111A-DT:13
5.2 FAM111A-DT:29