Transcript: FAM111A-DT:30

Basic information

LNCipedia transcript ID: FAM111A-DT:30 
HGNC Gene Symbol: FAM111A-DT    
HGNC Full Gene Name: FAM111A divergent transcript
Ensembl Gene ID: ENSG00000245571
Ensembl Transcript ID: ENST00000532845
Location (hg19): chr11:58903398-58907588
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 516 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532845; ENST00000532845.1; AP001258.4-003; OTTHUMT00000394608.1; NONHSAT021507
Alternative gene names: ENSG00000245571; AP001258.4; ENSG00000245571.2; OTTHUMG00000167435.1; ENSG00000245571.6; AP001258.1; FAM111A-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.7909 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM111A-DT:30 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPEG1-2:4
3.1 lnc-MPEG1-2:4
4.0 lnc-MPEG1-2:4
4.1 lnc-MPEG1-2:4
5.0 lnc-MPEG1-2:4
5.1 FAM111A-DT:14
5.2 FAM111A-DT:30