Transcript: FAM138A:3

Basic information

LNCipedia transcript ID: FAM138A:3 
HGNC Gene Symbol: FAM138A    
HGNC Full Gene Name: family with sequence similarity 138 member A
Ensembl Gene ID: ENSG00000237613
Ensembl Transcript ID: ENST00000461467
Location (hg19): chr1:35245-36073
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 590 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT000014; ENST00000461467.1
Alternative gene names: ENSG00000237613.2; FAM138A; F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.3198 non-coding 
CPAT coding probability 3.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138A:3 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM138A-6:3
4.0 FAM138A:3
4.1 FAM138A:3
5.0 FAM138A:3
5.1 FAM138A:3
5.2 FAM138A:3