Transcript: FAM138B:5

Basic information

LNCipedia transcript ID: FAM138B:5 
LNCipedia gene ID: FAM138B
Location (hg19): chr2:114335192-114336353
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 821 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000446648; ENST00000446648.1; FAM138B-001; OTTHUMT00000109026.2
Alternative gene names: ENSG00000226516; FAM138B; ENSG00000226516.2; OTTHUMG00000047820.2; F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9779 non-coding 
CPAT coding probability 3.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138B:5 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RABL2A-2:3
3.1 lnc-RABL2A-2:3
4.0 FAM138B:5
4.1 FAM138B:5
5.0 FAM138B:5
5.1 FAM138B:5
5.2 FAM138B:5