Transcript: FAM138C:1

Basic information

LNCipedia transcript ID: FAM138C:1 
HGNC Gene Symbol: FAM138C    
HGNC Full Gene Name: family with sequence similarity 138 member C
Ensembl Gene ID: ENSG00000218839
Ensembl Transcript ID: ENST00000305248
Location (hg19): chr9:34965-35871
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 668 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000305248.5
Alternative gene names: ENSG00000218839.4; FAM138C; F379; ENSG00000218839.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -34.0997 non-coding 
CPAT coding probability 3.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138C:1 yes no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 FAM138C:1
4.1 FAM138C:1
5.0 FAM138C:1
5.1 FAM138C:1
5.2 FAM138C:1