Transcript: FAM138C:5

Basic information

LNCipedia transcript ID: FAM138C:5 
LNCipedia gene ID: FAM138C
Location (hg19): chr9:34394-35841
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1107 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000449442.2
Alternative gene names: ENSG00000218839.3; FAM138C; F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.0997 non-coding 
CPAT coding probability 5.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138C:5 yes no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM138C-2:3
4.0 FAM138C:5
4.1 FAM138C:5
5.0 FAM138C:5
5.1 FAM138C:5
5.2 FAM138C:5