Transcript: FAM138D:3

Basic information

LNCipedia transcript ID: FAM138D:3 
LNCipedia gene ID: FAM138D
Location (hg19): chr12:67611-69070
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1115 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00020181
Alternative gene names: XLOC_009610; linc-IQSEC3; F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9779 non-coding 
CPAT coding probability 3.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138D:3 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IQSEC3-1:2
3.1 lnc-IQSEC3-3:2
4.0 FAM138D:3
4.1 FAM138D:3
5.0 FAM138D:3
5.1 FAM138D:3
5.2 FAM138D:3