Transcript: FAM138E:4

Basic information

LNCipedia transcript ID: FAM138E:4 
HGNC Gene Symbol: FAM138E    
HGNC Full Gene Name: family with sequence similarity 138 member E
Ensembl Gene ID: ENSG00000248893
Ensembl Transcript ID: ENST00000559252
Location (hg19): chr15:102495096-102495924
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 590 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559252.1; FAM138E-002; OTTHUMT00000417600.1; NONHSAT051706
Alternative gene names: ENSG00000248893.2; FAM138E; OTTHUMG00000172273.1; ENSG00000248893.3; F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.3198 non-coding 
CPAT coding probability 5.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138E:4 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F15-1:2
4.0 FAM138E:4
4.1 FAM138E:4
5.0 FAM138E:4
5.1 FAM138E:4
5.2 FAM138E:4