Transcript: FAM138E:5

Basic information

LNCipedia transcript ID: FAM138E:5 
LNCipedia gene ID: FAM138E
Location (hg19): chr15:102495209-102496113
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000507796.2; FAM138E-001; OTTHUMT00000417601.1
Alternative gene names: ENSG00000248893.2; FAM138E; OTTHUMG00000172273.1; F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.3198 non-coding 
CPAT coding probability 5.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138E:5 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F15-1:3
4.0 FAM138E:5
4.1 FAM138E:5
5.0 FAM138E:5
5.1 FAM138E:5
5.2 FAM138E:5