Transcript: FAM138F:2

Basic information

LNCipedia transcript ID: FAM138F:2 
LNCipedia gene ID: FAM138F
Location (hg19): chr19:76163-77690
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1187 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT060102
Alternative gene names: F379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.3395 non-coding 
CPAT coding probability 5.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM138F:2 no no no no

Available literature

  1. Wong (2004), Diverse fates of paralogs following segmental duplication of telomeric genes., Genomics
  2. Mah (2001), Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM138F-1:3
4.0 FAM138F:2
4.1 FAM138F:2
5.0 FAM138F:2
5.1 FAM138F:2
5.2 FAM138F:2